Hao Cheng (UC Davis)
Software for genome-wide association studies and genomic prediction. Written in Julia for high performance.
GWAS Software
Tools for genome-wide association studies and genomic prediction
Gensel
Dorian Garrick & Rohan Fernando (Iowa State)
Deprecated software for Bayesian genomic prediction. Replaced by JWAS.
This software is no longer maintained
BLUPF90 Suite
Uses EMMAX method. Computationally efficient by dividing the backsolved SNP effects for GWAS.
Gustavo de los Campos & Paulino Perez-Rodriguez (MSU)
Performs Bayesian regressions for GWAS and genomic prediction. R package implementation.
Yang Lab
Can perform both variance component estimation and GWAS analyses.