GWAS Software
Tools for genome-wide association studies and genomic prediction
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JWAS
Hao Cheng (UC Davis)
Software for genome-wide association studies and genomic prediction. Written in Julia for high performance.
GWASGenomic PredictionJulia
⚠️ Deprecated
Gensel
Dorian Garrick & Rohan Fernando (Iowa State)
Deprecated software for Bayesian genomic prediction. Replaced by JWAS.
GWASDeprecatedBayesian
This software is no longer maintained
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postGSf90
BLUPF90 Suite
Uses EMMAX method. Computationally efficient by dividing the backsolved SNP effects for GWAS.
GWASEMMAXBLUPF90
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BGLR
Gustavo de los Campos & Paulino Perez-Rodriguez (MSU)
Performs Bayesian regressions for GWAS and genomic prediction. R package implementation.
GWASBayesianR Package
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GCTA
Yang Lab
Can perform both variance component estimation and GWAS analyses.
GWASVariance Components