Genomic Processing Software
Tools for processing SNP chip data and calculating genomic relationships
💳 Paid
calc_grm
MiXBLUP Suite
Process SNP chip genotypes. Performs QC and calculates A, G, and H matrices for genomic evaluations.
Genomic ProcessingQCGRM
✓ Active
preGSf90
BLUPF90 Suite
Similar to calc_grm. Processes genomic data and works with postGSf90 for GWAS.
Genomic ProcessingQCBLUPF90
✓ Active
PLINK
Very popular software to process SNP panels. Industry standard for genomic data processing and QC.
Genomic ProcessingQCIndustry Standard
✓ Active
Helical
Modern web-based database platform for management and storage of all manner of breeding program data including pedigree, performance, SNP data, and more, and includes a command line toolset for manipulating and processing genomic data for evaluations.
Genomic ProcessingDatabaseWeb Platform