MiXBLUP Suite
Process SNP chip genotypes. Performs QC and calculates A, G, and H matrices for genomic evaluations.
Genomic Processing Software
Tools for processing SNP chip data and calculating genomic relationships
BLUPF90 Suite
Similar to calc_grm. Processes genomic data and works with postGSf90 for GWAS.
Very popular software to process SNP panels. Industry standard for genomic data processing and QC.
Modern web-based database platform for management and storage of all manner of breeding program data including pedigree, performance, SNP data, and more, and includes a command line toolset for manipulating and processing genomic data for evaluations.